SISG Module 12: Computational Pipeline for WGS Data
This site contains course materials for SISG Module 12: Computational Pipeline for WGS Data, July 18-20, 2018. Data used is located in the github repository from which the site is built, as well as in the TOPMed analysis pipeline.
To work through the exercises, log into RStudio Server at http://220.127.116.11:8787 with your username and password.
Slides for lectures are posted here below in the schedule. A detailed description of the course and instructor biographies can be found at https://www.biostat.washington.edu/suminst/SISG2018/modules/SM1812
Join the Slack channel here:
Wednesday, July 18
- Data formats
- Population structure and relatedness
Thursday, July 19
- Phenotype harmonization
- Association tests
- Variant annotation
Friday, July 20