1 Introduction

This site contains course materials for Course materials for SISG Module 17: Computational Pipeline for WGS Data, July 29-31, 2020. Data used is located in the github repository from which the site is built, as well as in the TOPMed analysis pipeline.

Videos and slides for lectures are linked below in the schedule. Links to live sessions can be found at https://si.biostat.washington.edu/suminst/sisg2020/modules/SM2017 (make sure to log in).

To work through the exercises, log into https://platform.sb.biodatacatalyst.nhlbi.nih.gov with your username and password.

Join the Slack channel here: https://uwbiostatisticssisg.slack.com

1.1 Schedule

NOTE: All times are Pacific Daylight Time (GMT-07:00)

Wednesday, July 29

Thursday, July 30

Friday, July 31

  • Zoom session 8:00-9:30 PDT - Mixed models
  • Zoom session 9:45-11:30 PDT - Variant annotation
  • Zoom session 12:30-13:45 PDT - Working in the cloud
  • Zoom session 14:00-14:30 PDT - Open session for questions/advice

Download the workshop data and exercises: https://github.com/UW-GAC/SISG_2020/archive/master.zip

1.3 Resources

If you are new to R, you might find the following material helpful: